PSMB7 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018309
Fusion event
HBV-PSMB7 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1819
Host Sequence
Chromosome
chr9
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
127170697/124408418 (Hg38)
End
127170697/124408418 (Hg38)
Location type
Intronic
Target gene
PSMB7
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-3180-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-3194-5p
Nearest miRNA
hsa-let-7a-1/Upstream/922796; hsa-mir-12126/Downstream/284024;
Nearest TSS
ENST00000422679/Upstream/23762; ENST00000618308/Downstream/6873;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/149956, chr9-CpG: 32/Downstream/6669
Upstream sequence
AGCAAAAATCTCTGCTACCTGGGGTTACAGAAGATAAGTTTGCCTGAAGCAGGTAGAAAAAGTGCTAGGGAGAAAATGGAGAATGGACTCTGCTCTCAAA
Downstream sequence
TGCTTGGGGAGTGGGAGGAGGTGGGGGTAGGGGGGCCTCCCTGTGGATGGAGGACGGGAGGTCGGCACTGCCGTAGGACAGCAACTCGTCCACGGGAGAC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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