SPAG16 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018314
Fusion event
HBV-SPAG16 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
492
Host Sequence
Chromosome
chr2
Cytoband
q34
Reference genome
GRCh37/hg19
Start
214785905/213921181 (Hg38)
End
214785905/213921181 (Hg38)
Location type
Intronic
Target gene
SPAG16
miRNAs that regulate target gene
hsa-mir-4713-5p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-1224-3p ; hsa-mir-6507-3p ; hsa-mir-6828-5p ; hsa-mir-651-3p ; hsa-mir-3662
Nearest miRNA
hsa-mir-10b/Upstream/163022; hsa-mir-1244-1/Downstream/3979332;
Nearest TSS
ENST00000437798/Upstream/431218; ENST00000480494/Downstream/2682;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/636479, chr2-CpG: 110/Downstream/888090
Upstream sequence
TCTGTAACCAGTAACAGGGGAACTTGAAGGCAGCCACTTGACACTAATGCTGTTGTCCTGAACATCGGTCACTTGCATCTGGGATGGTTTGTCAATTTCT
Downstream sequence
ttgttccacctggttgtgtcaagttggccatcttCTACTtaatcaggtcttcttgttgaattgaaactattgccattatatagtgctcttctttagctta
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate