WWOX _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018321
Fusion event
HBV-WWOX integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
3607
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
79162738/79128841 (Hg38)
End
79162738/79128841 (Hg38)
Location type
Intronic
Target gene
WWOX
Nearest miRNA
hsa-mir-1225/Upstream/2259822; hsa-mir-11401/Downstream/2256177;
Nearest TSS
ENST00000527434/Upstream/50607; ENST00000566103/Downstream/67518;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1028672, chr16-CpG: 44/Downstream/460753
Nearest cancer related gene
WWOX(TSG, No orient, 0)
Upstream sequence
GACTCATCGTTTGTGTTTGTCAATTTGCAGTTCAGCTTAGCCCTTCCCTGTTCCTGTGTAGTTACAATCTGGCCCTGAAGACATCCGAGGCACTTCAGTA
Downstream sequence
AGAGTATGAAGGTTGTGATTCAGTTGCCCAAGCAGTAAGGCCTGACTGGTGTCACGATCCCACAACCCGCACAAAGGTGCCATTGTTGCCCAGTGTGAAG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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