Basic Information
VIS ID
TVIS10018324
Fusion event
HBV-chr3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
832
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
143787401/144068559 (Hg38)
End
143787401/144068559 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/9630653; hsa-mir-1224/Downstream/7497317;
Nearest TSS
ENST00000440867/Upstream/94951; ENST00000482351/Downstream/1871353;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/95122, chr3-CpG: 97/Downstream/2092084
Upstream sequence
GTCAATAAAAAGAATCACAGATTTTTCAGGAAGGAAAAACCTTTTCTGAAGAAAAATAAATAAATAAAAGCTCTAACTCACTACAAAGTATTCCAAAATT
Downstream sequence
aaaCCCTCACAAAACAAAAACAAACAAACAAAATAAATATGTTGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATAGAGGTTGTTATTTTAG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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