Basic Information
VIS ID
TVIS10018328
Fusion event
HBV-chr18 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1826
Host Sequence
Chromosome
chr18
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
65970395/68303158 (Hg38)
End
65970395/68303158 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA18C
Nearest miRNA
hsa-mir-1-2/Upstream/1221472; hsa-mir-548av/Downstream/4550163;
Nearest TSS
ENST00000575820/Upstream/38331; ENST00000577835/Downstream/123872;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/786422, chr18-CpG: 67/Downstream/411539
Upstream sequence
AATGATTATGATAAAAATAAATCATTTTATTCAAGCTATTGTCATAATACAATGCATACATGAAAACAGAACCCAATAAGTAAACTCGGCCACCGGCCAT
Downstream sequence
TTGAGATTACTGGAATGTTGTTTATTTTATGATAGTGAGAGAGCTAAGCcaaaactgcacaactacatggaaactgaacaacctgctcctgaatgactac
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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