Basic Information
VIS ID
TVIS10018329
Fusion event
HBV-chr19 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1747
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
52098575/51595322 (Hg38)
End
52098575/51595322 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/388313; hsa-let-7e/Downstream/97290;
Nearest TSS
ENST00000633603/Upstream/13954; ENST00000601315/Downstream/3967;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/575, chr19-CpG: 20/Downstream/3226
Nearby gene
LINC01530(-942) ; LOC339352(+3188) ;
Upstream sequence
CAAAGAAGCATTTGTGGAGCACCTTCTGTGTGCCCCTAGGTACTAGATGCCTGGACGGGGTCAGAAGGACCCTGACCCACCTTGAACTTGTTCCACACAG
Downstream sequence
ctgcaggggcctcctcactgttctgtttcttcccttgccacactccaccctctattcaggcacagtgccaggaagcctgtggaaatataaatcagatcct
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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