PAX7 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018332
Fusion event
HBV-PAX7 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
397
Host Sequence
Chromosome
chr1
Cytoband
p36.13
Reference genome
End
19056988/18730494 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/1452519; hsa-mir-101-1/Downstream/152708;
Upstream sequence
CAAGGCCTCCCTGCTCTGTCTTCCACAGAGAAAACTGGGCAGGGCCAAGCTCACTGGGGCACAGGCCAGTGGCTAAGGCTGGCAGCAGGCTGCAGAGGCA
Downstream sequence
GTCCACAGCAGTGAATCCTGGCCTCCTGCCATACCTCTGCCAGTACCCACCCCAGCTCTCTGCCCCCTCCCCAAAAAGGTATCCAGCCAGATCTTTGGAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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