Basic Information
VIS ID
TVIS10018338
Fusion event
HBV-LOC107985255 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1717
Host Sequence
Chromosome
chr1
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
209287912/209114567 (Hg38)
End
209287912/209114567 (Hg38)
Location type
Intronic
Target gene
LOC107985255
Nearest miRNA
hsa-mir-101-1/Upstream/1312044; hsa-mir-1182/Downstream/317566;
Nearest TSS
ENST00000473358/Upstream/142113; ENST00000448988/Downstream/40534;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/870283, chr1-CpG: 72/Downstream/116933
Upstream sequence
CAAGGCCTCCCTGCTCTGTCTTCCACAGAGAAAACTGGGCAGGGCCAAGCTCACTGGGGCACAGGCCAGTGGCTAAGGCTGGCAGCAGGCTGCAGAGGCA
Downstream sequence
GTGAGGAGTAGCACAGTTGCTGCGAGCAGCTTCATGTTGGTAACAGTGGGGAGGGCGGCCTAGGAAGAGGGTGGTGGGGGTTTGGGGGACACTGAAGCCA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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