Basic Information
VIS ID
TVIS10018339
Fusion event
HBV-LOC100130207 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1761
Host Sequence
Chromosome
chr3
Cytoband
p26.2
Reference genome
GRCh37/hg19
Start
3747407/3705723 (Hg38)
End
3747407/3705723 (Hg38)
Location type
Intronic
Target gene
LOC100130207
Nearest miRNA
hsa-let-7g/Downstream/1544454;
Nearest TSS
ENST00000440867/Upstream/78427; ENST00000472075/Downstream/92491;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/525790, chr3-CpG: 190/Downstream/93106
Upstream sequence
tcaggcagagggagcagcttgGGAACTAGAAGAAGGTCAGTAAGGTTAGAGTGTAGCTGTTTATGAGGGGGATGGCGGCAGGTTCTAGCATTGGTCTCAG
Downstream sequence
CCAAGCTCTTGGTATCTATTCTTTAACTTGaataataaaaaataaattttttaaataataaCTTTCCATGTTTTAGAGGAACCGGCAGAGAAATAGTAAA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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