Basic Information
VIS ID
TVIS10018340
Fusion event
HBV-chr4 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1715
Host Sequence
Chromosome
chr4
Cytoband
q24
Reference genome
GRCh37/hg19
Start
101145165/100224008 (Hg38)
End
101145165/100224008 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1226548; hsa-mir-1243/Downstream/1016787;
Nearest TSS
ENST00000502981/Upstream/33226; ENST00000529296/Downstream/251069;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/33668, chr4-CpG: 178/Downstream/1122470
Nearby gene
LOC101929353(-8503) ;
Upstream sequence
ATTAAGACTTTTGGAATATGAGTTACTTTTGAGATTAGCTTTGTGATATTTTTTGTGCTCATTTGTCCAACAAAGTCTATTTTATTTTCATCTTAATTAG
Downstream sequence
gtgtgtttaagcactgggaggagagtctggataactgtgttggtcctcaggccctctggcggtgcattcaggcactggctgtggtaggcaggggtgggat
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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