Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene100513414100381260100414459100441206100446427100413319100418014100437171100440849100408913100412193100430030100433035100428834100430997100398071100399303100425728100426862100428590100429590100433638100434516100419154100419545100397513100397571100447337
Basic Information
VIS ID
TVIS10018345
Fusion event
HBV-LOC105375670 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1772
Host Sequence
Chromosome
chr8
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
101459565/100447337 (Hg38)
End
101459565/100447337 (Hg38)
Location type
Intronic
Target gene
LOC105375670
Nearest miRNA
hsa-mir-12123/Upstream/64492; hsa-mir-10400/Downstream/255631;
Nearest TSS
ENST00000518652/Upstream/16340; ENST00000521851/Downstream/28338;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/136851, chr8-CpG: 62/Downstream/111950
Upstream sequence
agagagaaagggagagaaagggaagcaggaggaaaggagagaggacgaggagtaaagaatgactgatgaagaaagaaataggaagaggagagagagagag
Downstream sequence
acttttttgtgtgttgatcttgtgccctgcaactttgctggctttgtttattagctctggtagatttcttgtggattctttgggattttctatatatagg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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