PTPRR _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018347
Fusion event
HBV-PTPRR integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
460
Host Sequence
Chromosome
chr12
Cytoband
q15
Reference genome
GRCh37/hg19
Start
71213385/70819605 (Hg38)
End
71213385/70819605 (Hg38)
Location type
Intronic
Target gene
PTPRR
miRNAs that regulate target gene
hsa-mir-150-5p
Nearest miRNA
hsa-let-7i/Upstream/1234782; hsa-mir-1178/Downstream/8599652;
Nearest TSS
ENST00000382841/Upstream/30623; ENST00000549015/Downstream/101238;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/209328, chr12-CpG: 104/Downstream/619807
Upstream sequence
GTTGAATCATAGGACAAAAAGAGAGAAAGGAGTGGAGTACAATGATCTTGTTAGtgtcacctgaagaatgatgaggtttgtaaatttgaaaaggagacct
Downstream sequence
ttatttctcataaagcattgcagcctgcagggtggccattctgacaggctgggaagcatagcctctggccagaagccagaaacagacactttggggatca
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate