Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018350
Fusion event
HBV-AOAH integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1813
Host Sequence
Chromosome
chr7
Cytoband
p14.2
Reference genome
Start
End
36647099/36607493 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1183/Upstream/1666659; hsa-mir-10399/Downstream/311864;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/217296, chr7-CpG: 136/Downstream/840258
Upstream sequence
CTCAGGACCTCAGCCTGCACTCTTATAATTACTACAGAGGAAATAGCAAGTAACGTTGAAAGCAAATGGAATGTGGAAGCATGTTTTAAAGTTTCTGTTA
Downstream sequence
agacaactccttcctttttcccactgcacactcatctgtggtgctaattcatcccttgccctggaagaaaatccagaccagcccaattatgcacatgctc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13