DAB1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018353
Fusion event
HBV-DAB1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
434
Host Sequence
Chromosome
chr1
Cytoband
p32.2
Reference genome
GRCh37/hg19
Start
57906699/57441027 (Hg38)
End
58340682/57875010 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
DAB1
Nearest miRNA
hsa-mir-12136/Upstream/2215304; hsa-mir-101-1/Downstream/1858217;
Nearest TSS
ENST00000473358/Upstream/16970; ENST00000609323/Downstream/9;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/16062, chr1-CpG: 87/Downstream/374590
Upstream sequence
TATGTAATCATCATAAGATGTAGCTTAGCACCTATATCTTTTAATCTTTAAAAATGTCCAGATGCAGAAAAAGTAAATAAAATATCACTCAGGAAATTAG
Downstream sequence
CTTTGGTTCTTCTGGACTGCCTCTTCAGGAAAGTGTCCAGAGAGGGCAAGCTCAACTACCTACTGAATCTCCAAACTAAGCACTGAAGATAATCCCTCCA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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