Basic Information
VIS ID
TVIS10018357
Fusion event
HBV-LOC105378841 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1859
Host Sequence
Chromosome
chr1
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
89505742/89040059 (Hg38)
End
89505742/89040059 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1D
Target gene
LOC105378841
Nearest miRNA
hsa-mir-101-1/Upstream/2682372; hsa-mir-11399/Downstream/4806773;
Nearest TSS
ENST00000473358/Upstream/17165; ENST00000641099/Downstream/15282;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/47138, chr1-CpG: 114/Downstream/484192
Upstream sequence
CTGCCTGGGTGGTTCCAAGTCTCGCAGATATGGTGTTCCAGAGACAAAGGGGTCATGGATGGAGGACCAATTCAGAGCAGGCAGACAGTATGGGTGGCTT
Downstream sequence
TTCAAATATTGTTTACAAAGAAAATTAAAAAAGAAATATTAATCATTTAAAGATTATTGTAAAATCTCTGACTTTAAAATCTTAATAAGTAAAATGTTAG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate