Basic Information
VIS ID
TVIS10018361
Fusion event
HBV-LINCR-0002 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1796
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
GRCh37/hg19
Start
191205029/191487240 (Hg38)
End
191205029/191487240 (Hg38)
Location type
Intronic
Target gene
LINCR-0002
Nearest miRNA
hsa-let-7g/Upstream/1657231; hsa-mir-3137/Downstream/3647266;
Nearest TSS
ENST00000440867/Upstream/26077; ENST00000438488/Downstream/70084;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/157319, chr3-CpG: 24/Downstream/375899
Upstream sequence
TACTCCCAGCGTTTTGCAAGTTTCAAAGTCTGACTTGACTTTCCTTCCTTTTCCTGGAACTGATCCATGAGTATCGAGAGTAAAGCTGCCCGCACCTACT
Downstream sequence
gcagcaaacaatctgaaatagaaattgagaaaataactccatttataatacctatcgaaaaaataaaatacctaggaattaacataaccgaaggagtgaa
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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