Basic Information
VIS ID
TVIS10018365
Fusion event
HBV-LOC105378065 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1801
Host Sequence
Chromosome
chr6
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
153174268/152853133 (Hg38)
End
153174268/152853133 (Hg38)
Location type
Intronic
Target gene
LOC105378065
Nearest miRNA
hsa-mir-10398/Upstream/1750357; hsa-mir-1202/Downstream/2000227;
Nearest TSS
ENST00000381078/Upstream/21220; ENST00000442269/Downstream/120852;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/215796, chr6-CpG: 146/Downstream/129140
Upstream sequence
TTCTCCAAACACTGAGGCCCCTCCCAATCTACTCCATATACTTATGCTTTGTGTATCAGGTCCCACCTGCACCTCTTAGAAAGTACCCCAACTCCCAATT
Downstream sequence
CTCTGCCTAATCATCTCAGGTCTTCCCATCAACAAGTAACCAACCCCGAAACCTTGTTTGACTTTGCTATTCTCTCAAAGCATTGTTCTAAGTGTTTTTC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate