Basic Information
VIS ID
TVIS10018366
Fusion event
HBV-chr7 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1818
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
88178322/88549007 (Hg38)
End
88178322/88549007 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/12633738; hsa-mir-10399/Downstream/3655008;
Nearest TSS
ENST00000635602/Upstream/242116; ENST00000444032/Downstream/161624;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/328728, chr7-CpG: 65/Downstream/210167
Upstream sequence
tttggtttgctagtattttgttgagaatttttgcatcaatattcatcagagatattgacctgtagttcattcattttctttctttccttctttctttttc
Downstream sequence
TTTCATATTTGAAAGCATAAGTGAAAATTTATACTGAACATAGAATTACCATTTACATAATCATGTAAGTGTGATAGATGGAGAACAATTACCTGTGAAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate