Basic Information
VIS ID
TVIS10018368
Fusion event
HBV-chr8 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1760
Host Sequence
Chromosome
chr8
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
20259779/20402268 (Hg38)
End
20259795/20402284 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/2720611; hsa-mir-10400/Downstream/1842682;
Nearest TSS
ENST00000518652/Upstream/52012; ENST00000523496/Downstream/297660;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/98094, chr8-CpG: 24/Downstream/1348282
Upstream sequence
TGTAAAATAGACAATACCAAGAACTTATTCATGTGTGTGTGTATTTTTTACATATTTCTGTATGATTTATTTTAAAACGGAAGAAATCACATGATTGTTC
Downstream sequence
aataattttaataatcacataaaaatatccagcacaaacatggtaaatatttcagtgtcttgcatttgataaaaaattatgaagcaggaaaatataaccg
Target sequence
tcccagtacaaagatc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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