Basic Information
VIS ID
TVIS10018373
Fusion event
HBV-LNCOG integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1968
Host Sequence
Chromosome
chr12
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
76691327/76297547 (Hg38)
End
76691327/76297547 (Hg38)
Location type
Intronic
Target gene
LNCOG
Nearest miRNA
hsa-let-7i/Upstream/6712724; hsa-mir-1178/Downstream/3121710;
Nearest TSS
ENST00000382841/Upstream/37642; ENST00000551082/Downstream/50895;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/212196, chr12-CpG: 31/Downstream/50582
Upstream sequence
TCTCTCTCTCCCAGAGCTGGAATATTATGttatcattatcattatcattatcatGATAATTTTGACAGTGGTGATGGCATCAGGGAGCCGTTCTCACACT
Downstream sequence
CACGCAGATAAAGGCATCACGGACCCAGTCTTGTAACTCTAGAGGAGCACTGTCCCCTCTGAGATTCCATTATTGGACTGGAGCCTGCAGTAGAAACATG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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