Basic Information
VIS ID
TVIS10018379
Fusion event
HBV-chr11 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1818
Host Sequence
Chromosome
chr11
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
124270844/124400948 (Hg38)
End
124270844/124400948 (Hg38)
Location type
Intronic
Target gene
OR8B2 ; OR8B3
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-335-5p
Nearest miRNA
hsa-let-7a-2/Upstream/1019436; hsa-mir-3167/Downstream/2587510;
Nearest TSS
ENST00000527297/Upstream/1924; ENST00000642111/Downstream/23945;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/659111, chr11-CpG: 44/Downstream/221820
Upstream sequence
CACCTTATTCATGGCTGAAGTCACCTCTTGGTTACAGTAGCGTAGCGTGCCCGTGTGCATGTCCTTTGCGCCTGTGACCACCACCCCAACAAACCATCCA
Downstream sequence
GGTTGGCCACATAAGCTCAGAGATGGCCTTATCTCACAGAGGAGATACAGCTTTCAGAAGTTAGAGAAAGCAAGCCATTTATATTTCtttctcttttttt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate