PCDH15 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018380
Fusion event
HBV-PCDH15 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1586
Host Sequence
Chromosome
chr10
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
57122497/55362737 (Hg38)
End
57122497/55362737 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA10C
Target gene
PCDH15
Nearest miRNA
hsa-mir-1265/Upstream/754780; hsa-mir-107/Downstream/1941742;
Nearest TSS
ENST00000439456/Upstream/43123; ENST00000453639/Downstream/105590;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/2491071, chr10-CpG: 36/Downstream/265571
Upstream sequence
ATTCTATTAAAGATAAAGATCTTggccaggcgtggtggctcacgcctgtagtcccagcagtttgggaggccaaggcaggtagatcacttgaggtcaggag
Downstream sequence
AGCATTTTAATTTGAAGCCTCTCGTTGACCCAAAGGATATCGACCTCAGCCCTATACATATTGGGTTTGGCTGTATCCCACCACGTTACAAACTCTGTGT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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