Basic Information
VIS ID
TVIS10018381
Fusion event
HBV-POM121L12 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1852
Host Sequence
Chromosome
chr7
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
53106046/53038353 (Hg38)
End
53106046/53038353 (Hg38)
Location type
Intronic
Target gene
POM121L12
Nearest miRNA
hsa-mir-1183/Upstream/8156553; hsa-mir-10399/Downstream/3917432;
Nearest TSS
ENST00000635602/Upstream/2711; ENST00000629899/Downstream/478763;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/2087, chr7-CpG: 21/Downstream/148936
Upstream sequence
GAATAATAAAATAACTATCATTtaccaagtactttatcatttcatttatttattacaatagctctgtaaggtaaggaccattgtccacattttgcagatg
Downstream sequence
ggaggggacacacatccaaactatatcaTCAGGCTTGGAGTCAGGGACTGTAGAAGCCACTAGGAGATATTAGGTTGTGAAGTAAAGCGGGCAATAAGAC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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