Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene3288604133310945338661213335785533358968333747493337482933376081
RYR3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018382
Fusion event
HBV-RYR3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1785
Host Sequence
Chromosome
chr15
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
33668282/33376081 (Hg38)
End
33668282/33376081 (Hg38)
Location type
Intronic
Target gene
RYR3
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-367-5p
Nearest miRNA
hsa-mir-1268a/Upstream/2310940; hsa-mir-10393/Downstream/1005988;
Nearest TSS
ENST00000557528/Upstream/65013; ENST00000635875/Downstream/157241;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/64279, chr15-CpG: 114/Downstream/662287
Upstream sequence
CTCAGATACCTAGCACCTACTGCAGGCTGAGGAGAGAGTGGAAGGAAGAAGCAGGTCCCCCTAGTGTGGACTGGGCTGAGATCGGGTCATCTGCTGAACT
Downstream sequence
aacatttctgtaaacccaagtttcttcttgtcccttttcaggcaacgttcttctccccgccccagagacgaccacattctaatttctagcaccatggttt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate