CFH _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018396
Fusion event
HBV-CFH integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
457
Integrated sequence
ACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATC| |AAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTA
Host Sequence
Chromosome
chr1
Cytoband
q31.3
Reference genome
GRCh37.55
Start
196712579/196743449 (Hg38)
End
196712579/196743449 (Hg38)
Location type
Intron19
Fragile sites / regions
FRA1K
Target gene
CFH
miRNAs that regulate target gene
hsa-mir-146a-5p
Nearest miRNA
hsa-mir-101-1/Upstream/160968; hsa-mir-1182/Downstream/2115424;
Nearest TSS
ENST00000473358/Upstream/6541; ENST00000471440/Downstream/31346;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/134568, chr1-CpG: 29/Downstream/134579
Upstream sequence
ATACtatacatacatattatgcatatgtatctgtgtacattttgtatatatgtatgtatatataatttcatttgattatcatagcaaacttgtaggtgct
Downstream sequence
CACAGGTAAATGGAGAATTGGTATGCAAGAGCATCTTCTCAAGACTAGCATGAAACACTTCAAATGCATAGGAAaaagccatagagtggtacagttggaa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate