VISDB Viral Integration Site DataBase

VIS ID

TVIS10018409

Fusion event

HBV-SERPING1 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1676

End

2458

Integrated sequence

CAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGG

Chromosome

chr11

Cytoband

q12.1

Reference genome

Start

End

57367350/57599877 (Hg38)

Location type

Intron2

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-1273g-3p ; hsa-mir-498 ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6720-5p ; hsa-mir-7703 ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6776-5p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-629-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-873-3p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-4284 ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p

Nearest miRNA

hsa-mir-129-2/Upstream/855896; hsa-let-7a-2/Downstream/41321;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/31864, chr11-CpG: 19/Downstream/47050

Upstream sequence

CACCTTATTCATGGCTGAAGTCACCTCTTGGTTACAGTAGCGTAGCGTGCCCGTGTGCATGTCCTTTGCGCCTGTGACCACCACCCCAACAAACCATCCA

Downstream sequence

GGTTGGCCACATAAGCTCAGAGATGGCCTTATCTCACAGAGGAGATACAGCTTTCAGAAGTTAGAGAAAGCAAGCCATTTATATTTCtttctcttttttt