Basic Information
VIS ID
TVIS10018420
Fusion event
HBV-chr21 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1823
Integrated sequence
TTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACT| |TTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAA
Host Sequence
Chromosome
chr21
Cytoband
q21.2
Reference genome
GRCh37.55
Start
24032150/22659830 (Hg38)
End
24032150/22659830 (Hg38)
Nearest miRNA
hsa-let-7c/Upstream/3973666; hsa-mir-155/Downstream/419454;
Nearest TSS
ENST00000624081/Upstream/139772; ENST00000421604/Downstream/405661;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/1661585, chr21-CpG: 28/Downstream/2701964
Nearby gene
LINC00308
Upstream sequence
AGCTGCATGAATTTACTTAGTTGACTTGCCTTGGGAGGATAAATCCCCTGATAAAATGGGGCATATGGGGTGAACATTTAATTGGGATTGAGGTGATTTA
Downstream sequence
AGGACAGTAGACCCAGGTAAAAATATATTAAAGAATTAGCCATGTTCATACACAAATACAAATGAAAACGTCCTCTTTGGCTGGCTTTATAGTGAGAGAT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate