Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018424
Fusion event
HBV-GBE1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1526
End
1757
Integrated sequence
CGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAG
Host Sequence
Chromosome
chr3
Cytoband
p12.2
Reference genome
Start
End
81773730/81724579 (Hg38)
Location type
Intron15
Target gene
Nearest miRNA
hsa-let-7g/Upstream/2216610; hsa-mir-12124/Downstream/3661131;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1957829, chr3-CpG: 75/Downstream/36585
Upstream sequence
AGGAAGAAAATTCTCGATGGGAGAGAGGCGGCCAGGGCGGGTGGCAAGTTCCCTCACACATTCATGCTGACAAACAAGCACCTGCATGTAGTGATCTGGA
Downstream sequence
TCTATTTCCCGTTTCCACAGCTCCTTTACATCATTCCAAACCCCTTTAATAGTCACAACATCTTAGCTTAACAAACAGTGATTTAATGATTTCATCCTTA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.