Basic Information
VIS ID
TVIS10018437
Fusion event
HBV-LOC102724805 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1786
Integrated sequence
AACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGT| |AGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCT
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37.55
Start
88976121/88676603 (Hg38)
End
88976121/88676603 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2L
Target gene
LOC102724805
Nearest miRNA
hsa-mir-1285-2/Upstream/594004; hsa-mir-10b/Downstream/135767;
Nearest TSS
ENST00000437798/Upstream/48432; ENST00000283646/Downstream/15041;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/48826, chr2-CpG: 65/Downstream/14848
Nearby gene
RPIA
Upstream sequence
agtatcctgccctagtaattgatagaatacataggaagaaaattagTCAGACTTTTCTGACTAATGTAGCCTTGAACAACACTatgacaccatggtctag
Downstream sequence
gtgatcctctcacctcagcctcctgagaagctgggactacaggtatgctccatcatgccgggctaattttttatttttttgtagagacagcatctcactg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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