Basic Information
VIS ID
TVIS10018438
Fusion event
HBV-LOC102724297 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1293
End
1615
Integrated sequence
GTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACT
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37.55
Start
46447007/46405516 (Hg38)
End
46447007/46405516 (Hg38)
Location type
Intron3
Target gene
LOC102724297
Nearest miRNA
hsa-mir-12127/Upstream/1543535; hsa-let-7g/Downstream/1444039;
Nearest TSS
ENST00000440867/Upstream/32846; ENST00000495870/Downstream/1543;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/409535, chr3-CpG: 26/Downstream/59155
Upstream sequence
GGACAGGACTGAGGGGATGTGGCTGTCAAGGCCTTTCTAGGGGCGATGCTGTCTCTCCCTCAGCATAGGGAGTGGGCCCTTCCACCTCTGGCCTCTCTCC
Downstream sequence
CATTCAAGATCCTGAGTGTCCTGCCCAGCTGCAGGAGGTGGAGAGACCCAGGAGGAGGGGCCACTGCTGATCCCAGGCTGTAGGGGGTGGGAAGAGTGTC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate