Basic Information
VIS ID
TVIS10018441
Fusion event
HBV-LOC105378983 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1821
Integrated sequence
TGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAA| |CTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATA
Host Sequence
Chromosome
chr5
Cytoband
q11.2
Reference genome
GRCh37.55
Start
57489057/58193230 (Hg38)
End
57489057/58193230 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA5H
Target gene
LOC105378983
Nearest miRNA
hsa-mir-10397/Upstream/2684304; hsa-mir-103a-1/Downstream/336813;
Nearest TSS
ENST00000502646/Upstream/70889; ENST00000513924/Downstream/261886;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1018536, chr5-CpG: 157/Downstream/266277
Nearby gene
LINC02101
Upstream sequence
TTTTATATGGCACATCTTTTGGTCCATGTGAAAACAAGTTTTTTGAATGTTAACTATTTTCTGACACTTTGGAGTTACTGTTGCTCTTCCCATTTCCATT
Downstream sequence
ccaacatggtgaaaccccgtctcagaaataatgccacatatctacaactatctgatctttgacaaacctgagaaaaacaagaaatggggaaaggattccc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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