Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018446
Fusion event
HBV-HPSE2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1710
Integrated sequence
TGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTT| |CAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCA
Host Sequence
Chromosome
chr10
Cytoband
q24.2
Reference genome
End
100396775/98637018 (Hg38)
Location type
Intron5
Target gene
Nearest miRNA
hsa-mir-107/Upstream/205658; hsa-mir-1307/Downstream/287481;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/168943, chr10-CpG: 46/Downstream/595357
Upstream sequence
CAGGTAAGTAATCAATTAAAAGAGGACCCTTCAATGATCAATTCTGATACTTGAAAAAGCTCAAGCTTAAACGTGTTTTTGCATTGAAAATGTGTCTGTG
Downstream sequence
AACCAGTATTTCCCGTATTCTGCAGATTTCATTATAAAGGCATTTCTTATTTTTAAATAATCAGATAAAACAAAAAGATTTTATTTTGACTTCTCAGACT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.