Basic Information
VIS ID
TVIS10018451
Fusion event
HBV-chr13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1824
Integrated sequence
TTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTT| |TTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAG
Host Sequence
Chromosome
chr13
Reference genome
GRCh37.55
Start
86910558
End
(Hg38)
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearby gene
SLITRK6
Upstream sequence
GGCCTCCGACACTCCAGCCTTGCCCCGGGCAACAGGACATGGAGCTGGGACTCTTCACACAGCAAGGAGCCTCTCCATCCATGTATTCCTTCCCTGTTTT
Downstream sequence
CAAGCAGAGGCACTGGACCTGAAATAATTCACAAATAAGTTGAGTAAATTATTTTGAACAATGTGATTAAATGAGGGCAAAATAGAGCACATTGTTTGTT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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