Basic Information
VIS ID
TVIS10018456
Fusion event
HBV-LINC01909 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1774
Integrated sequence
CTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTA| |CTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTC
Host Sequence
Chromosome
chr18
Cytoband
q22.2
Reference genome
GRCh37.55
Start
68019498/70352262 (Hg38)
End
68019498/70352262 (Hg38)
Location type
Exon4
Target gene
LINC01909
Nearest miRNA
hsa-mir-1-2/Upstream/3270576; hsa-mir-548av/Downstream/2501059;
Nearest TSS
ENST00000575820/Upstream/14952; ENST00000563639/Downstream/32329;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/62436, chr18-CpG: 21/Downstream/78308
Upstream sequence
AAATGTTGGGGTTGGGGGAGAGGGCAGGAATTGACCTTAAATGAACACACTCTATGTTaatgatcctatgctaggtacattattcctagcaatttctaaa
Downstream sequence
TATTGGAGGCAAGTTTTGTCTTGCTTACAATGAGGTTATACAAAGCATAACAAAATTCACATTTTGTTAAGTGACTACCATATGATCACTCTGAATTTTA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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