Basic Information
VIS ID
TVIS10018459
Fusion event
HBV-chr20 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1806
Integrated sequence
ACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGC| |ACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGG
Host Sequence
Chromosome
chr20
Cytoband
p12.2
Reference genome
GRCh37.55
Start
11255180/11274532 (Hg38)
End
11255180/11274532 (Hg38)
Fragile sites / regions
FRA20B
Nearest miRNA
hsa-mir-103a-2/Upstream/624837; hsa-mir-1-1/Downstream/7196083;
Nearest TSS
ENST00000382410/Upstream/5697; ENST00000450368/Downstream/26993;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/599569, chr20-CpG: 37/Downstream/412342
Nearby gene
LOC339593
Upstream sequence
TCTCTAGCTTTCAAGTGTCTGCTACTTAGTCCATCTGTTGTTCTATTATGTTGTGTTTGGCAAACAGATGCAGGAGAAGAACACTATTGCCTTTTCTGTT
Downstream sequence
GTTAATGATTTGGACACAGAGTTCGTGTGGAATGTTCTGAAGAACCACTGACATCTTCCAAGAAAAGAATCCATTAAGATGAATAGAATTTGCTACTTGA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate