Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018461
Fusion event
HBV-CRYBB2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr22
Cytoband
q11.23
Reference genome
Start
End
25611767/25215800 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1286/Upstream/2329421; hsa-let-7a-3/Downstream/239846;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/36225, chr22-CpG: 82/Downstream/66809
Nearby gene
Upstream sequence
aagaacgtttatcttgaagtcagactgatgtaagttcaagcactggtcctaccacttcctggctgtgtgacctcgaacaagttacttaagctctatgagc
Downstream sequence
cttagcttccttatctgtattaggggacattaataatacctacttcaaagatagttgtgaggattgaattaatggaaccagacagtttcagggcttaatc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.