Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018465
Fusion event
HBV-OTUD7A integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1611
Integrated sequence
CGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCAT| |GGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTC
Host Sequence
Chromosome
chr15
Cytoband
q13.3
Reference genome
Start
End
32132162/31839959 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-30c-5p ; hsa-mir-491-3p ; hsa-mir-548aw ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-1255b-2-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5582-3p ; hsa-mir-1238-3p ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-153-5p ; hsa-mir-670-3p ; hsa-mir-8080 ; hsa-mir-1197
Nearest miRNA
hsa-mir-1268a/Upstream/774818; hsa-mir-10393/Downstream/2542110;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/355174, chr15-CpG: 177/Downstream/30002
Nearby gene
Upstream sequence
CATTTTCCAACTGAAGTCATTTTATTCCCTCAGTTTATAAATACCTCGAATTCTTTAGCCGAAAAGGCAAGGTAACTTGATAGAGCATCCCCCTTTGTGA
Downstream sequence
TTGTTTATGTTATTTTGTCTTGCTAGCTCTTTAACTTGACCAGACTCTAACTACACAAAATAAAATCTCTTTTTAAAATAAAAATGACCTACAATGACTA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.