Basic Information
VIS ID
TVIS10018468
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
312
End
411
Integrated sequence
TCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCA
Host Sequence
Chromosome
chr18
Cytoband
q12.1
Reference genome
GRCh37.55
Start
27453296/29873331 (Hg38)
End
27453296/29873331 (Hg38)
Nearest miRNA
hsa-mir-1-2/Upstream/3281796; hsa-mir-122/Downstream/425579;
Nearest TSS
ENST00000575820/Upstream/345028; ENST00000583089/Downstream/839944;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/1695120, chr18-CpG: 128/Downstream/1168192
Nearby gene
MIR302F
Upstream sequence
atttgtataaacaaataagccaaaagaaacaaatagaatttctatgccttaactttgtccccttgcttgttaactttttgttgtttctatttatatctta
Downstream sequence
agggaaaggtttccagtcccctctcatgagaagatgcatctcactgccttgttgcagtggcctcagggtaaggaattgggacccacccagtgtgacaaat
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate