ALB _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018473
Fusion event
HBV-ALB integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
477
End
1858
Integrated sequence
CCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTT
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37.55
Start
74280751/73415034 (Hg38)
End
74280883/73415166 (Hg38)
Location type
Exon9
Target gene
ALB
miRNAs that regulate target gene
hsa-mir-492
Nearest miRNA
hsa-mir-12113/Upstream/7138106; hsa-mir-1243/Downstream/3158402;
Nearest TSS
ENST00000502981/Upstream/1460; ENST00000486939/Downstream/2840;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/155621, chr4-CpG: 20/Downstream/205161
Upstream sequence
AAATCACTTTGCAATCATCAATAGCTTCATAAATGTTAATTTTGTATCCTAATAGTAATGCTAATATTTTCCTAACATCTGTCATGTCTTTGTGTTCAGG
Downstream sequence
GGTAGGTTTATTGTTGGAAAAAAATGTAGTTCTTTGACTGATGATTCCAATAATGAGAAAGAAAAATAATGCAAGAATGTAAAATGATATACAGTGCAAT
Target sequence
GTTTTTGTATGAATATGCAAGAAGGCATCCTGATTACTCTGTCGTGCTGCTGCTGAGACTTGCCAAGACATATGAAACCACTCTAGAGAAGTGCTGTGCCGCTGCAGATCCTCATGAATGCTATGCCAAAGT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate