Basic Information
VIS ID
TVIS10018475
Fusion event
HBV-chr17 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1814
Integrated sequence
GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
Host Sequence
Chromosome
chr17
Cytoband
q24.3
Reference genome
GRCh37.55
Start
68347657/70351516 (Hg38)
End
68347658/70351517 (Hg38)
Nearest miRNA
hsa-mir-10226/Upstream/1251860; hsa-mir-1250/Downstream/4397096;
Nearest TSS
ENST00000595228/Upstream/181981; ENST00000442627/Downstream/17399;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/181937, chr17-CpG: 26/Downstream/1764321
Nearby gene
KCNJ2
Upstream sequence
ACAAGCAGGACCAGCCCGGGGCACTGAGCGCTGCTGAGGTGGAGAAGAGGCTGGCAGTCCGAGAGCTAGCAGCCGCCACTCTCACTCATGTGCAAGGCTG
Downstream sequence
aaaatgattttggtgtttgcttggcttctgacagctgtatctctacacctgttcccttcttcctcaaaatatcctcaaaagccatcagattattccacct
Target sequence
t
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate