Basic Information
VIS ID
TVIS10018477
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1923
End
2037
Integrated sequence
GAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTG
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37.55
Start
275251/275251 (Hg38)
End
275251/275251 (Hg38)
Nearest miRNA
hsa-mir-8078/Upstream/162912; hsa-mir-1-2/Downstream/3610102;
Nearest TSS
ENST00000575820/Upstream/7103; ENST00000580756/Downstream/41486;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/6869, chr18-CpG: 182/Downstream/224064
Nearby gene
COLEC12
Upstream sequence
ctaggtgcgaaatcttttgttcgagcgcttgtttactttgtgactccgagctcttatttccaacaatttgggggctcatctgggattcccattctcctcc
Downstream sequence
tgcctgatatctctctgtagtactttctcccaacattttgttttttttaagagatggggcctcaccacgtagcccaggctagtctcaaactcctgggcca
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate