VISDB Viral Integration Site DataBase

VIS ID

TVIS10018480

Fusion event

HBV-UBB integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

480

End

1573

Integrated sequence

CTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCA

Chromosome

chr17

Cytoband

p11.2

Reference genome

Start

End

16285213/16381899 (Hg38)

Location type

Intron1

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-1287-5p ; hsa-mir-760 ; hsa-mir-148b-5p ; hsa-mir-92a-1-5p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-181b-5p ; hsa-mir-100-5p ; hsa-mir-99a-5p ; hsa-mir-4260 ; hsa-mir-1227-5p ; hsa-mir-3678-3p ; hsa-mir-4671-3p ; hsa-mir-486-3p ; hsa-mir-2467-3p ; hsa-mir-4259 ; hsa-mir-382-5p ; hsa-mir-495-5p ; hsa-mir-3666 ; hsa-mir-301a-3p ; hsa-mir-130a-3p ; hsa-mir-4295 ; hsa-mir-454-3p ; hsa-mir-130b-3p ; hsa-mir-301b-3p ; hsa-mir-365a-3p ; hsa-mir-365b-3p ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-2054 ; hsa-mir-4799-5p ; hsa-mir-653-3p ; hsa-mir-4738-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-6884-3p ; hsa-mir-5690 ; hsa-mir-4724-5p

Nearest miRNA

hsa-mir-1253/Upstream/99811; hsa-mir-10226/Downstream/1431581;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/445, chr17-CpG: 22/Downstream/4864

Upstream sequence

GCAGCTTCACTCTCCAGCCTTCCCCGGCCTCAGCAAGGATGAGTTGATCCATGAGCTTATTTGGCTTTGGGGCATCCCTGGCCTCCTTTTCTTTCTTTTC

Downstream sequence

AGGTCAAAATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCA