APOA2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018483
Fusion event
HBV-APOA2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
963
End
1094
Integrated sequence
TTAACAGGCCTATTGATTGGAAAGTATGTCAACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCTTTTACACAATGTGGTTATCCTGCGTTGATGCCTTTGTATGCATGTATTCAATCTAAGCAGGCTTTCA
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37.55
Start
161192705/161222915 (Hg38)
End
161192841/161223051 (Hg38)
Location type
Exon2
Target gene
APOA2
Nearest miRNA
hsa-mir-101-1/Upstream/1322836; hsa-mir-1182/Downstream/4135;
Nearest TSS
ENST00000473358/Upstream/7618; ENST00000465512/Downstream/357;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/20449, chr1-CpG: 54/Downstream/35636
Upstream sequence
CTTTTTTTTTCTTTTTTTGCTGTCCTTTTTACACCTTATTTTTATCTCTACACTCTTGCATTCCTCACCTCCTTCACTGCACCCTCCCTGTCCTTAAACA
Downstream sequence
TGCCcacacacacacacacacacacacacacacacacacacacTCTTTTCAGCTGGGTCCACAGCAGTGAATCCTGGCCTCCTGCCATACCTCTGCCAGT
Target sequence
ACTTGGCCTCGGCCTGAAGCTCTGGGCTCTTGACCTTCTCCATCAGGTCCTTGCCATAGTCAGTCACGGTCTGGAAGTACTGAGAAACCAGGCTCTCCACACATGGCTCCTTTGCCTGTCTCCGAACCAAAGCTCC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate