Basic Information
VIS ID
TVIS10018489
Fusion event
HBV-CFAP57 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
860
End
959
Integrated sequence
GGTTACTCTCTAAATTTTATGGGTTATGTCATTGGATGTTATGGGTCCTTGCCACAAGAACACATCATACAAAAAATCAAAGAATGTTTTAGAAAACTTC
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37.55
Start
43657817/43192146 (Hg38)
End
43657922/43192251 (Hg38)
Location type
Intron6
Target gene
CFAP57
Nearest miRNA
hsa-mir-12136/Upstream/20434; hsa-mir-101-1/Downstream/172397;
Nearest TSS
ENST00000473358/Upstream/7268; ENST00000428122/Downstream/23105;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/19765, chr1-CpG: 30/Downstream/80562
Upstream sequence
aagagtggaatcacatgatatttttccttttatgtctgtcaaattttatttagcatgctgttatcactatcattcctgctgtagtgtgtatcagaacttc
Downstream sequence
ggttggtttttagtgttgttcagatcttctgtttcttgtcatcttctgcctacttgtcttgattgtttttgaaagtggtgtattgcatggcctggtgtgg
Target sequence
tggcctggcatataatctattctggagactgctctatatgcacttgagaagaatgtatattctgttattattgagttgggtgttctatatacgtctgttaggtct
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate