PID1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018491
Fusion event
HBV-PID1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
56
End
1863
Integrated sequence
CCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAA
Host Sequence
Chromosome
chr2
Cytoband
q36.3
Reference genome
GRCh37.55
Start
230045487/229180771 (Hg38)
End
230045629/229180913 (Hg38)
Location type
Intron2
Target gene
PID1
Nearest miRNA
hsa-mir-10b/Upstream/1708584; hsa-mir-1244-1/Downstream/2181795;
Nearest TSS
ENST00000437798/Upstream/496191; ENST00000465090/Downstream/51172;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/998934, chr2-CpG: 50/Downstream/90079
Upstream sequence
gtcagtggaggcactccactataaaactaccacaggtggagtgccaggggaagctgctggcctccagatgttgcaggagcctgggactggagaagctgtg
Downstream sequence
ttcactggacgccgccagaacagcgacgctttccaaggcacgggcccctctctcggggcgaacccattccagggcaccctgcccttcacaaagaaaagag
Target sequence
cgcccatctccgccactccggattcggggatctgaacccgactccctttcgatccgctgagggcaagggaggccattgcctgtcccttcggaacggcgctcgcccatctctcaggaccgactgacccgtgttcaactgctgt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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