hsa-mir-130b-3p _LIHC.png
CCNA2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018495
Fusion event
HBV-CCNA2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1435
Integrated sequence
ATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCC| |GTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCT
Host Sequence
Chromosome
chr4
Cytoband
q27
Reference genome
GRCh37.55
Start
122742246/121821091 (Hg38)
End
122742323/121821168 (Hg38)
Location type
Intron6
Target gene
CCNA2
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-let-7b-5p ; hsa-mir-146a-5p ; hsa-mir-193b-3p ; hsa-mir-132-3p ; hsa-mir-212-3p ; hsa-mir-98-5p ; hsa-mir-197-3p ; hsa-mir-10b-3p ; hsa-mir-130b-3p ; hsa-mir-27b-3p ; hsa-mir-548aw ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-1825 ; hsa-mir-4676-5p ; hsa-mir-575 ; hsa-mir-548e-5p ; hsa-mir-148a-3p ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-4295 ; hsa-mir-130a-3p ; hsa-mir-301b-3p ; hsa-mir-3666 ; hsa-mir-454-3p ; hsa-mir-301a-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-6835-3p ; hsa-mir-29c-3p ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-22-3p
Nearest miRNA
hsa-mir-12113/Upstream/7164237; hsa-mir-1305/Downstream/3686091;
Nearest TSS
ENST00000502981/Upstream/11105; ENST00000567769/Downstream/2764;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/19488, chr4-CpG: 71/Downstream/2234
Upstream sequence
TCTGGAAAGGGTTGATGGAGATATCAGGGCTAAGGAAGATTGTTTATGTACATTTCCTTAGGGAGAAGCCACAAGGAAGAAGTGAAAATACATCAACAAC
Downstream sequence
GGAATCTCATATTAACAAAGCACTTATTTCTTCAAACTAAAAAGAGCTTCTCATGACAAAATATGTAGAATATTTTACCCTAGTCTCAGTATCTCTGTAC
Target sequence
CTGGGACAATTCAAAAGATATGATTAAATTAATTGTTTGCCTATTTAGTTTAATAGCTAAAAATGACTGCCATGGAA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate