SRA1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018497
Fusion event
HBV-SRA1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
530
End
629
Integrated sequence
GACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTC
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh37.55
Start
139933945/140554360 (Hg38)
End
139934309/140554724 (Hg38)
Location type
Intron2
Target gene
SRA1
miRNAs that regulate target gene
hsa-mir-218-5p
Nearest miRNA
hsa-mir-10397/Upstream/2906711; hsa-mir-103a-1/Downstream/8947;
Nearest TSS
ENST00000502646/Upstream/3232; ENST00000623481/Downstream/2722;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/6454, chr5-CpG: 43/Downstream/2446
Upstream sequence
ccttcccgtgtcccagtgttctcattgttcagttcctacctatgagtgagaacatgtggtgtttggttttttgtccttgctatagtttgctgCACTTTTA
Downstream sequence
tatctctgcagcagcatttgagtgagctctttatagtcactctctctacttttcacattctctcctcagcccattccagctgtttctgttctcactactg
Target sequence
cctttccttgctatcttcttctgacactgcctaatgtttcattgaaaagtagaggtcattaaacagaactctctcatcttcccaccaccattcctcctaacccacctgcatctgtggccacttttcttcctcttgtaatagatgaaaaggttcctgctcctatcaaaagccatcttaccagctgtactctgcatcctagcctctcttgtcttctctagacttccctactgtaactatcttctcttgcatcatcag
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate