ALDOB _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018499
Fusion event
HBV-ALDOB integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
256
End
1729
Integrated sequence
CGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGG
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
GRCh37.55
Start
104193178/101430896 (Hg38)
End
104193178/101430896 (Hg38)
Location type
Exon8
Target gene
ALDOB
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-378a-3p
Nearest miRNA
hsa-let-7a-1/Upstream/3201679; hsa-mir-12126/Downstream/5170032;
Nearest TSS
ENST00000422679/Upstream/1021; ENST00000424154/Downstream/4878;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/31650, chr9-CpG: 34/Downstream/18279
Upstream sequence
aaaaaaaagcctatgtgaattatgggtcactatcaaaagaatgaacatttgcttaagattttcagaaggagaaaagagaaaacagagcccagaaagcata
Downstream sequence
gctcaaaataatcatgtattggactctcttatgattctggggttgactgggctcagcaaggcggttcatgcttggactctctcctgcaggtgcagtcaga
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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