Basic Information
VIS ID
TVIS10018505
Fusion event
HBV-NIFKP4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
2170
Integrated sequence
CAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCAGTTATGTCA| |ACACTAATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGG
Host Sequence
Chromosome
chr15
Cytoband
q24.2
Reference genome
GRCh37.55
Start
75544895/75252554 (Hg38)
End
75544899/75252558 (Hg38)
Location type
Intronic
Target gene
NIFKP4
Nearest miRNA
hsa-mir-10393/Upstream/411847; hsa-mir-11181/Downstream/101053;
Nearest TSS
ENST00000557528/Upstream/40387; ENST00000300576/Downstream/6041;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/43738, chr15-CpG: 35/Downstream/83351
Nearby gene
GOLGA6C
Upstream sequence
TAATAACTTCCCTGGGAGATACTGTGGGCACTCACTTAATAGATACAAAATATAAATGATATTTTGGAAGTTGTATTATTTACTTTAAAAAAACTTTTTT
Downstream sequence
ggctggagtgcaatggcaagatctcaactcacctcaacgtctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgagattacagg
Target sequence
ccca
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate