Basic Information
VIS ID
TVIS10018513
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1824
Integrated sequence
TTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTT| |TTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAG
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37.55
Start
67557120/67091437 (Hg38)
End
67557120/67091437 (Hg38)
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/462920; hsa-mir-11399/Downstream/1092081;
Nearest TSS
ENST00000473358/Upstream/37338; ENST00000637002/Downstream/35824;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/36981, chr1-CpG: 27/Downstream/43270
Nearby gene
C1orf141
Upstream sequence
gtagtatgcaccaagatccagaagcatgagggtacccctttggctgcagaataccgagtatactatagtgtagagtatgctgaaatagaagtgtgagaga
Downstream sequence
tttctttgcagatgaagataatagcagagaagttagatcatttgcccatcacattgttcagtaTATAGTGAACATGTATTAACATTTGTGGTATGAATGA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate